I finished reading Siddhartha Mukherjee’s book from 2016, “The Gene: An Intimate History”, a dense, engaging book, written in a prose style, conversational, thorough, accessible and personal, exceedingly rare qualities to find in a book covering such technical topic. Mukherjee, trained and worked as an oncologist, won the Pulitzer Prize for his earlier book on cancer, “The Emperor of all Maladies: A Biography of Cancer”. He is currently an associate professor of medicine at New York Presbyterian Hospital/Columbia University. Understood to be the ‘best’, or most complete and thorough history of genetics, our understanding of it and the ethical questions of its increasingly influential applications in medicine, society and evolution. Of such broad scope in the changing landscape of medicine and its science, it has expectedly, become subject to an array of criticisms. The practice of science is not perfect. Our understanding is forever evolving and as much as promoters might insist that theirs is solid and fixed, our knowledge will always be imperfect. We circle around a topic, defining it closer and closer, but never quite understanding it fully, questions leading us to more questions, our knowledge shaped by what we already ‘know’, and very occasionally propose entirely new ways of explaining, new theories, that dislodge previous established theory. Continue reading
Category Archives: Ecology
The Much Maligned Western Juniper: The Role of Juniperus occidentalis in Central Oregon

Old growth Junipers near Cline Buttes. These two rooted down long ago on top of this lava flow. Much of the lavas here were produced during the Deschutes Formation over many thousands of years more than 5 million years ago. Surface lavas, cliffs and slopes define the area with a few sediment filled basins dominated by Sagebrush and Bitterbrush.
The Western Juniper is the singular native tree of Dry Canyon and the immediate Redmond area. I grew up with it here in Central Oregon. When we moved here in ’61 i remember driving north, passing through miles and miles of various Pine forests, which eventually yielded, to the Juniper. Riding in our VW bus, leaving Bend, the landscape’s dominant tree, changes abruptly. Bend sits within the ecotone, the relatively narrow transition zone, between Ponderosa Pine forest and Juniper steppe. What were these trees? Coming from California’s Salinas Valley, the landscape could hardly be more different to a six year old. So different in form and detail, Junipers squatted darkly across the landscape, nothing like the tall, majestic Pines or Oaks I was more familiar with or even the Lodgepole Pine we drove through across the pumice plain of the LaPine area. Continue reading
Climate Change and the Limits to Life: a couple reviews and examination

On Healing: Life, Place and Relationship in Oregon’s Great Basin Country

The massive fault block of Hart Mountain, Poker Jim Rim in the distance to the north. The gravel county road switchbacks up the more than 3,000′ beginning from the center in the distance here. From here this is how you get to Steens Mountain without doing miles of backtracking.
I woke up this morning to the sound of bird song…nothing else. There were Western Meadowlarks and a multitude of others, I’m sorry to say I don’t know, but beautiful and distinct. I was laying in bed, atop our truck, thinking about how rare an event this is for so many of us…not that the birds aren’t here greeting the morning every day, but that so many of us aren’t ‘available’ to hear them, sequestered away safely in our homes, otherwise occupied or, more commonly, the birds literally excluded from our urbanized and ‘modern’ places of residence, their own places developed/destroyed. Entire neighborhoods and cities excluding all but the most common songbirds and passerine species. Little quarter is afforded most wildlife in modern development…and that upon which their lives depend. Continue reading
Weeds, Weeding and the Health of Our Public and Private Landscapes: an example from the ‘hood
Every gardener is a weeder. Gardens are created landscapes, often expressions of the individual gardener or, lacking of intent and design sense, those of a chosen designer. We live in our landscapes as active, responsible, creators, participants and stewards. Gardeners are trying to create a particular look or to grow particular plants native to their area, or with ornamental value or food plants to feed themselves and their families. Some of us are simply pursuing what we understand to be a healthy relationship with one’s place, to undo the damage and allow a new healthy and vital landscape to grow. These are landscapes of our choice. Our intention and control results in various volunteers and weeds finding their own place and so follows the need for weeding.
We watch carefully, monitor the impacts of our work, attempt to understand what result is moving us closer to our goal and which might be indicators of further loss. Landscapes and gardens are incredibly complex systems and anyone who claims to have all of the answers is fooling himself and you. Our landscapes are broken, by us and our predecessors. The Pandora’s Box of weeds and disruption was burst open long ago. The only way ahead is to find a new path. Weeds are here filling the niches we have collectively made and maintain for them. The more one is surrounded by aggressive, well adapted weeds, the more time we must spend controlling them. While this can be significant, gardeners mostly take the work in stride, a necessity to reach our goal, a goal which may be the simple act itself, of working in concert with our place…open to its teachings. Gardening, is a way of life, a smaller scale version of farming and the management of large ‘natural areas’ with their attendant commitment, rhythms and demands. Continue reading
Dry Canyon Proposal: the need for change in maintenance, use and planning
[The following is a piece I wrote and sent to our local Parks staff, its advisory citizens committee, mayor and city manager…I got little back in response. I’ve developed a relationship with one of the city arborists and the park’s planner as well as have met several active neighbors interested in protecting Dry Canyon’s natural areas, several of whom have natural resources backgrounds with agencies. The City has no natural resource or botanical staff. There is no formalized friends group, nor is their an outreach and public education program that addresses these problems and the role of residents in their solution. Signage is minimal and inadequate. Their horticultural expertise would also seem quite limited. This is understandable as the City’s population has grown very rapidly in recent years. The need for such programs and an increase in expertise on staff will only increase as Redmond’s population continues to grow.]

Redmond’s Dry Canyon looking south from the west rim on the Maple Street Bridge. The area in the immediate foreground burned this last summer.

The canyon floor is variable, but as this pic shows, a solid layer of hardened lava underlies what soil is here, either blown in or washed in, a limiting factor of what can grow here. Rabbitbrush is a common and ubiquitous native pioneer.

Match of the canyon floor is recovering from pasture use. These areas have relatively deep soils and are still transitioning with many weedy mustards, annual grasses like Cheat and planted grasses like Crested Wheat and Annual Barley. Native Bluebunch Wheat is scattered as are other natives. Gray Rabbitbrush, a native seral species has moved into much of it, but the weeds are dominant. Sagebrush and Bitterbrush are more at the edges and lower rim areas.

This section of bottomland, former pasture, probably burned not that long ago, has quite a colony of Rabbitbrush coming along, all it would appear of even age, suggesting a fire. Rabbitbrush are early colonizers and ‘prepare’ the way for natives to follow. This is just north of the Maple Bridge.

This area, maybe 5 acres, burned in July. It will be interesting to see what comes back and what the City may plant??? Fire kills Sagebrush and Juniper, while it seems to favor Cheatgrass. So far, April ’24, nothing has been replanted. The window for seeding is closed. Rabbitbrush can survive a burn. This site is unfenced, with very fragile soils and we’ve already observed new bike trails in it.
My wife and I are both recent returnees to Central Oregon having both grown up here. We are also frequent walkers in Dry Canyon, a place I spent many hours in playing and exploring as a kid in the 60’s. Redmond has changed a lot over the intervening years…change that continues apace as it grows. I’m not going to whine about the ‘good old days’ and things lost. Much of the change I welcome or at least accept (We did move back!), but population growth, in addition to bringing along economic vitality and stability, new and enriching opportunities and a more diverse community, increases the ‘pressures’ on the naturally limited assets that largely define the place and attract residents. I’m speaking here of the natural landscape, its features and the opportunities which it affords us for recreation and quiet enjoyment. Realtors were once fond of saying that no one is making new land, as a prompt for buying…it is a fixed and limited quantity. This limitation has profound implications for a growing population. We have far more people today ‘enjoying’ a limited, and increasingly over utilized landscape. Continue reading
Notes on Complexity: A Scientific Theory of Connection, Consciousness and Being, Thoughts on the Book
[My ‘reviews’ are not strictly book reviews. I’m not trying to distill the author’s ideas down into a simpler ‘bite-sized’ piece or discuss their ‘style’. These are my thoughts after having read these books. My attempts to make sense of them, usually after several rewrites, as I work to fit them into what I already ‘know’, an attempt to make the ideas presented in this book, consistent with those which I’ve read by other authors. They include ideas not covered by this author. Rarely, if ever, can you come to an understanding from a singular perspective. This is a link to an annotated bibliography on my Blog of several of the more significant books which have influenced me on this topic,]
Complexity theory? Do we need a theory to determine what is complex? No, that’s not what this is about. Theise’s book does not layout a system for determining what should be considered complex/complicated or not. This is a book about systems and structures in nature and how they come about. He discusses how mainstream science has fallen short in explaining this and why, the author believes, without changes in approach, we will continue to fall short. He goes on to present an alternative, or, rather, a ‘sister’ approach which can provide a previously excluded way of ‘knowing’, and in so doing, can account for the ‘gaps’. The problems are not just that this is a difficult concept to understand, but that at the most basic, quantum, level, that at which nothing can be divided smaller, where all things ‘begin’, actions and processes do not follow human logic and contemporary expectation….
I remember reading the book “The Limits to Growth” in the early ’80’s, which introduced me to ‘systems theory’, an approach which required looking at all of the parts and actions within a system, consider their relationships and how they work together, in order to understand its ‘working’. A system could be ‘modeled’, mathematically and the long complex equations run on a computer. There were generally multiple possible models to run. This gave us a degree of ‘predictive’ power, but these would always be approximations, because no model could be perfect and every situation, every starting point, would result in a somewhat different ‘answer’. I followed this with James Gleick’s book on Chaos Theory and its ‘ability’ to explain certain types of patterns, which appear spontaneously in nature, while introducing me to the idea and maths of ‘fractals’. There were multiple books on ecology which necessarily take a wholistic approach. James Lovelock and Lynn Margulis, published their book on Gaia Theory, a product of their collaboration which began in the 1970’s, a theory of the Earth itself functioning as a self-regulating system, as if it were a gigantic, single, organism of which we ourselves are a part. All of these were related, coming out over a short span of years. These were ‘new’ hypotheses and theories, never before seriously considered by science back then, but now being investigated, their validity, and the answers they suggest, impossible to ignore.
Science often advances this way. Seemingly radical ideas, rejected by the majority of the mainstream…until resistance worn down, their validity demonstrated through thoughtfully conducted and reviewed experimentation, the scientific community then coming around to more broadly adopt them and reshape science and our understanding. (Some argue that this ‘process’ requires some number of the old guard to literally die, younger minds being more free to consider the new.) Margulis and Lovelock’s ideas were just too far out there for most at the time. For many, such thinking then belonged to the realm of metaphysics, or fanciful science fiction, frivolous exercises in thought and belief. Exploring these ideas, testing their validity, only became possible with the computational capacity of ever more powerful computers and an openness to branches of thought once rejected by science. ‘Game Theory’ and cybernetics played a role in all of this as well. Complexity Theory has far more capacity to explain how matter and functional systems emerge, or manifest, than mainstream science could historically. Nature, through the conditions and forces in play at any given moment, ‘drive’ the universe toward order along with the ‘creation’ of complex structures and functions, at the cost of energy spent, ‘held’ in the new structures and dissipated away as lost heat. All of countless processes linked to one another through a myriad of relationships and the feedback loops which comprise them. The universe continues to evolve, and as it does, it continuously spins off everything in it, from sub-atomic particles to human beings over time, a process which it itself is directly influenced by its evolving ‘self’.
Otherlands: A Journey Through Earth’s Extinct Worlds, a Valueable Entry into Understanding This World
I mostly read non-fiction, books on history, the ‘natural sciences’, about life. I get my fiction in the form of television and movies, graphic novels and no, there is a lot more out there other than the limited, repetitive genre of super-heroes from the DC and Marvel universes. I’m drawn to the speculative stories, alternative tellings of this world, of life lessons, attempts to reimagine the past, or invent possible futures, stories that question what we are generally taught in this life. But really, I’m a science guy, reading those authors who draw from the leading edge of science, and the scientists themselves, who are skilled enough communicators, not something that necessarily is companion to those ‘doing’ science, those who can clearly discuss what they’ve learned and present reviews of entire fields of study, which strive to show the reader how our understanding of the world is changed. Continue reading
Knapweeds in Redmond’s Dry Canyon and the Pursuit of a Healthy Landscape

Redmond’s Dry Canyon looking south from the west rim on the Maple Street Bridge. The area in the immediate foreground burned this last summer.
If you garden, or maintain a landscape, you come to understand that not all weeds are the same. Each will have its own ‘strengths’, or perhaps you might call it ‘virulence’. Any particular weed, just like any other plant, will respond ‘positively’ to supportive growing conditions, conditions which often closely align with those which exist in its place of origin. Plant explorers and nursery growers are always looking for ‘new’ plants for landscape use. in a way, they have to walk a fine line. They must find plants, that with reasonable effort on the part of the gardener, can thrive across a range of conditions, unless they are looking for specialty plants, for narrow, niche, markets. The introduction of new plants must be somewhat measured, our enthusiasm tempered, because plants which are too adaptable, too vigorous, may possess the ability to escape our cultured gardens and find a place in the surrounding, uncultivated, landscape.
For Central Oregon, when we look beyond our regional natives, we must keep this in mind. Exotics from similar growing and climatic regions around the world offer both promise and threat. We want our plants to be successful, but not too. Sometimes through the process of trade, the movement of livestock and agricultural products, particularly aggressive species hitch a ride. A few weed seeds can be easy to miss. If they are aggressive enough and go unnoticed, a distinct possibility, it is likely that they wont be detected until a sizable local population asserts itself…and if no one is watching, that can be a fateful error. One group of plants, with many wonderful possibilities, also include species which can be exceedingly problematic here in Central Oregon, these are from regions sometimes referred to as Steppe. Continue reading
On Weeds, Disruption and the Breaking of Native Plant Communities: Toward a More Informed Working Definition of Weeds

The bottom land in Redmond’s Dry Canyon was used for decades as low quality pasture, the native community pretty much obliterated. Those areas with surface rock are more likely to retain more of the original plant community, although Cheatgrass has invaded much of those areas as well. The is looking southerly over one of the larger ‘pasture’ areas near the disc golf course. There is very little Cheatgrass through this section south of West Rim Park. It includes a few native seral species which typically occupy disturbed sites as a site transitions, including Gray Rabbitbrush you see here. Found in this area too is Secale cereale, Annual Rye, a non-native, which appears to have been planted along more formal paths to limit Cheatgrass spread(?). Junipers are moving in. Sagebrush hasn’t yet.
It is commonly said that a weed is a plant out of place…and of course ‘we’ are the one’s who decide this. Some will try to argue that there are no weeds, that all plants belong and if we only left weeds alone landscapes would reach a balance on their own. If one’s time frame is long enough this may be the case, though this will take considerably longer than one of our lifetimes, and then there is our inability to actually leave landscapes on their own, or to at least consciously moderate our disturbance of them. Weeds are plants. They are not a separate classification of plants. They are plants removed from their places of origin and released into another where they have competitive advantages. Most people still simply tend to refer to plants they don’t like or want as weeds. These positions are at odds with one another. This leads to confusion and a lack of clarity, undermining any urgency to take action.
Weeds have become ‘personal’, their status a matter of ‘opinion’….A weed is a weed only if “I” agree that it is, or perhaps some ‘expert’, such as when agricultural scientist identify them as an economic threat to farms and label them as ‘noxious’. Without agreement and urgency there is a tendency to do nothing about them. Plants in general are attributed little intrinsic value. For many people they are just there. Native plants we vaguely understand as belonging to a place, but most people would be hard pressed to identify and name many at all. Quite different species are often lumped together, their relationships unnoticed. Natives are reduced to being ‘background’, their status reduced to decoration, attractive or not, a ‘space’ filler, perhaps a hinderance to what we would chose to do with a place. Continue reading


